Ben J Woodcroft's repositories
bioruby-orthomcl
Ruby wrappings and useful methods for the OrthoMCL database of protein orthology
blast_link
A few scripts for turning a vanilla NCBI wwwblast installation into a link filled paradise.
eupathdb_ubiquity
EuPathDB Ubiquity scripts
reubypathdb
Ruby classes for parsing EuPathDB database download files from PlasmoDB, ToxoDB, CryptoDB, TriTrypDB, PiroplasmaDB and FungiDB, etc.
wwood.github.com
Personal Pages
ApiLocServer
The web interface behind the ApiLoc server
array_pair
random useful methods for working with Ruby arrays, hashes and objects
ben_bioinformatics
A collection of random bioinformatic rails plugin
bioruby-aliphatic_index
TODO: one-line summary of your gem
bioruby-emboss_six_frame_nucleotide_sequences
a method to get the nucleotide sequence of translations done by the EMBOSS bioinformatics package program transeq
bioruby-hmmer_model
Parse PFAM HMM definition files
bioruby-hydropathy
Hydropathy scale for BioRuby
bioruby-logger-plugin
BioRuby logger
bioruby-octopus
Running and parsing of the protein transmembrane domain predictor octopus
bioruby-wolf_psort_wrapper
Enables the localisation predictor WoLF PSORT to be run locally
essentiality
Finding patterns to predict the essentiality of genes
isoelectric_point_4_R
This library is a ruby implementation for calculating the iep of a protein, based on bioperl’s approach. It can be installed as a gem. It is currently been refactored to fit as a bioruby plugin.
ruby-ensembl-api
A ruby API to the Ensembl database
ruby-progressbar
Ruby/ProgressBar is a text progress bar library for Ruby.
scriptShed
sequence manipulation scripts that are actually useful
vietnamese_mnemosyne
A deck of memory flash cards from learning Vietnamese