wwood / kingfisher-download

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

https://wwood.github.io/kingfisher-download

wwood/kingfisher-download Issues

The downloaded fq file using ena-ftp is missing base values.
Updated 2 months ago2
Ena-ascp download gives 'Deprecated peer license' error
Closed 4 months ago3
[Question] How to download directly to S3 bucket?
Closed 4 months ago8
Feature Request: annotate samples using Sample Accession
Closed 5 months ago3
Failed to authenticate
Closed 10 months ago12
Option to set the output directory
Closed 7 months ago6
Unexpected behavior when downloading fastq using SRA identifier
Updated 7 months ago3
Feature Request: support sralite format.
Updated 7 months ago1
Feature Request: ignore error term
Updated 7 months ago1
ENA-FTP download aborted
Closed 9 months ago4
kingfisher executable file not found in $PATH in Singularity
Closed 10 months ago6
How split files in Kingfisher get download process?
Closed 10 months ago3
Method ena-ascp ena-ftp failed
Closed 10 months ago8
ASCP FAILED
Closed 10 months ago2
Allow multiple bioproject ids in input
Closed 10 months ago1
AttributeError: 'float' object has no attribute 'split'
Closed a year ago2
Could you make a bioconda package, please
Closed 2 years ago3
kingfisher annotate error when accession has a blank attribute
Closed 2 years ago3
Add `extern` to PyPI dependencies
Closed 2 years ago1
ena-ascp fails with ascp v4.2
Closed 2 years ago1
Get .sra files without convertion
Closed 2 years ago1
install kingfisher on m1 MacBook Pro
Closed 2 years ago3
Installing with kingfisher.yaml leads to aria2c issue + fix
Closed 3 years ago3
Feature request: allow downloading from GSA
Updated 3 years ago3
kingfisher error
Closed 3 years ago4
Does not work with python3.9
Closed 3 years ago4
No FTP download URLs found for run error
Closed 4 years ago6
SRA API change
Closed 4 years ago2
No FTP download URLs found
Closed 4 years ago2
Failed to Authenticate
Closed 5 years ago16
Help on getting this to work
Closed 5 years ago8
check completness
Closed 5 years ago1