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wei wang (wwang-nmdp)

wwang-nmdp

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github-cheat-sheet

A list of cool features of Git and GitHub.

License:MITStargazers:47871Issues:0Issues:0

Theano

Theano was a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It is being continued as PyTensor: www.github.com/pymc-devs/pytensor

Language:PythonLicense:NOASSERTIONStargazers:9896Issues:0Issues:0

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Language:ScalaLicense:Apache-2.0Stargazers:1000Issues:0Issues:0

TensorFlow-Examples

TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:43385Issues:0Issues:0

flow-OptiType

Use nextflow to run BAM files through OptiType

License:GPL-3.0Stargazers:4Issues:0Issues:0

workflows

Toil workflows for bigdatagenomics tools. Apache 2 licensed.

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rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

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ensembl-pipeline

*DEPRECATED* Job management for the Ensembl Genebuild pipeline

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mhcflurry

Peptide-MHC I binding affinity prediction

Language:PythonLicense:Apache-2.0Stargazers:192Issues:0Issues:0

OptiType

Precision HLA typing from next-generation sequencing data

Language:PythonLicense:BSD-3-ClauseStargazers:183Issues:0Issues:0

weblogo

WebLogo 3: Sequence Logos redrawn

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