wvdtoorn

ruptures

ruptures: change point detection in Python

SegPore

SegPore is a software to segment the raw Nanopore direct RNA sequence, and to estimate various RNA modifications and secondary folding structures.

FLAMES

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.

Badread

a long read simulator that can imitate many types of read problems

slurm-hyper-search

tomlparse

argparse.ArgumentParser wrapper to parse TOML files from the command-line

quivr

Open-source RAG Framework for building GenAI Second Brains 🧠 Build productivity assistant (RAG) ⚡️🤖 Chat with your docs (PDF, CSV, ...) & apps using Langchain, GPT 3.5 / 4 turbo, Private, Anthropic, VertexAI, Ollama, LLMs, Groq that you can share with users ! Efficient retrieval augmented generation framework

neurips19_DTWNet

DTWNet: a Dynamic Time Warping Network

LDPS

Learning DTW-Preserving Shapelets

soft-dtw-divergences

An implementation of soft-DTW divergences.

DTW_Subsequence

using Spring for DTW to find sequence vs sequence

marp-recipes

Marp presentation slides and templates

nanomix

aisem23

Repository for the SCS Spring School on Digital Chemistry

sigtk

A simple toolkit for manipulating nanopore signal data

kneed

Knee point detection in Python :chart_with_upwards_trend:

spatio-temporal-alignements

Spatio-temporal alignements: Optimal transport in space and time

MIME_ML

planify

Task manager with Todoist and Nextcloud support designed for GNU/Linux 🚀

sbi-workshop

SBI Workshop jointly by Helmholtz AI + ML ⇌ Science Colaboratory

paccmann_rl

Code pipeline for the PaccMann^RL in iScience: https://www.cell.com/iscience/fulltext/S2589-0042(21)00237-6

pyPESTO

python Parameter EStimation TOolbox

PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

sbi

Simulation-based inference toolkit

squigulator

a tool for simulating nanopore raw signal data

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

DBA

DBA: Averaging for Dynamic Time Warping

bmDCA

Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

bmDCA

drive

Google Drive client for the commandline