wuyank

FlashFry

FlashFry: The rapid CRISPR target site characterization tool

Generative_Deep_Learning_2nd_Edition

The official code repository for the second edition of the O'Reilly book Generative Deep Learning: Teaching Machines to Paint, Write, Compose and Play.

interactive-tutorials

Interactive Tutorials

scNAT

LigandMPNN

ProteinMPNN

Code for the ProteinMPNN paper

RFdiffusion

Code for running RFdiffusion

chroma

A generative model for programmable protein design

ProDy

A Python Package for Protein Dynamics Analysis

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

tmscoring

Python implementation of the TMscore program

localcolabfold

ColabFold on your local PC

SGPPI

SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network

scrcpy

Display and control your Android device

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

HIGH-PPI

tcr-bert

Large language modeling applied to T-cell receptor (TCR) sequences.

ColabFold

Making Protein folding accessible to all!

IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

biotite

A comprehensive library for computational molecular biology

efficient-evolution

Efficient evolution from protein language models

bert

TensorFlow code and pre-trained models for BERT

FLASH2

Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

TEIM

TEIM: TCR-Epitope Interaction Modeling

PanPep

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

domain-list-community

Community managed domain list. Generate geosite.dat for V2Ray.

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files