Sanger Institute Systems Group

Sanger Institute Systems Group's repositories

pcp

Parallel copy tool

Language:PythonGPL-2.031 7 17

pwalk

Parallel filesystem walking utilities and library.

Language:PythonGPL-2.06 60

ceph-disk-utils

Shell utilities for managing disks within ceph clusters

Language:ShellGPL-3.02 40

lsf-log-watch

LSF log watching via AMQP

Language:PythonGPL-3.02 2 3

osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.

Language:JinjaNOASSERTION2 40

wr

experimental reimplementation of wr using TDD

Language:GoMIT2 50

image-creation

Language:ShellGPL-3.0100

irods_migrate

tooling for bulk migration of data in iRODS using parallel iphymv

Language:ShellGPL-3.01 60

irods_testing

Language:ShellGPL-3.01 7 2

letsencrypt-rgw

LetsEncrypt Support for the Ceph RADOS gateway

Language:ShellGPL-3.01 70

mistral_benchmarking_cromwell_nextflow

Language:wdlNOASSERTION100

mpistat

Efficiently lstat every file in a filesystem tree in parallel across multiple nodes using MPI.

Language:Python100

os-cluster

Language:ShellGPL-3.01 60

benchmarking

A benchmarking suite for Sanger's Genomics Workloads

Language:PythonAGPL-3.0000

Docker-create

Dockerfiles and configuration components for HPC Singularity and cloud use

Language:DockerfileGPL-3.0020

image-creation-ci

Language:ShellGPL-3.0020

autoscale-etcd

Language:ShellGPL-3.0000

conda_samtools_development

This repository is to build samtools package from it's development branch using conda.

NOASSERTION000

cromwell_wr_openstack

Language:wdlNOASSERTION000

duplicity-backup.sh

Bash wrapper script for automated backups with duplicity supporting Amazon's S3 online storage as well as other storage destinations (ftp, rsync, sftp, local storage...).

Language:ShellGPL-3.0000