wtsi-hpag / LinkStats

Collect and process statistics from aligned linked-reads.

LinkStats

Collect and process statistics from aligned linked-reads.

Bioconda

LinkStats is available on bioconda.

> conda install linkstats

Usage

LinkStats --help

Requirments, Running

• htslib >=1.12
• python >=3.8
  • click >=8.0.1
  • pandas >=1.2.5
  • numpy >=1.20.3
  • seaborn >=0.11.1
  • matplotlib >=3.4.2
  • tqdm >=4.61.1

Requirments, Installing

• meson
• C++ compiler (tested with clang 11)
• setuptools
• git

cd LinkStats
python setup.py install

Third-Party Acknowledgements

• stb_sprintf.h