Giters
wtmatlock
/
flanker
Gene-flank analysis tool
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Stargazers:
25
Watchers:
4
Issues:
31
Forks:
6
wtmatlock/flanker Issues
Question about Flanker Docs
Updated
5 months ago
Comments count
13
Failed to install Flanker
Closed
a year ago
Comments count
7
Moving to BLAST
Updated
2 years ago
Conda installation broken by abricate dependency
Updated
2 years ago
Comments count
8
Flanker doesn't handle multi-copy genes
Updated
2 years ago
Comments count
1
Unable to update Abricate; issues after trying
Closed
2 years ago
Comments count
1
FASTA files of flanking sequences are deleted by default in clustering mode
Updated
2 years ago
Comments count
1
Dependency problems since Conda update
Closed
3 years ago
Comments count
2
using draft assemblies?
Closed
3 years ago
Comments count
1
Default flank behaviour for reverse complemented sequences
Closed
3 years ago
Comments count
4
Deal with messy multi fasta headers
Closed
4 years ago
Comments count
3
Improve testing
Updated
4 years ago
Comments count
2
ERROR: Gene not found in sequence. Can i add custom database? . short contigs and --window option
Closed
4 years ago
Comments count
2
Optionally run until no more clusters found
Updated
4 years ago
Citation info
Closed
4 years ago
More robust querying
Closed
4 years ago
CI with Github Actions
Closed
4 years ago
Comments count
1
Parallelise abricate when supplied multifasta
Updated
4 years ago
Error if gene is not annotated (gene_sense)
Closed
4 years ago
Comments count
2
Gene query naming
Closed
4 years ago
Comments count
5
Fasta header naming
Closed
4 years ago
Comments count
1
Reverse complements
Closed
4 years ago
Left/right renaming
Closed
4 years ago
Abricate query matching
Closed
4 years ago
Comments count
1
Multiple annotations of same gene
Closed
4 years ago
only run abricate once 2
Closed
4 years ago
Don't re-run abricate for each window length
Closed
4 years ago
Help by default is broken
Closed
4 years ago
Comments count
1
default arguments
Closed
4 years ago
Choose abricate db
Closed
4 years ago
Optionally include the gene
Closed
4 years ago