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WSLH Bioinformatics (wslh-bio)

WSLH Bioinformatics

wslh-bio

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Wisconsin State Laboratory of Hygiene Bioinformatics

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WSLH Bioinformatics's repositories

dryad

Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.

Language:GroovyLicense:GPL-3.0Stargazers:17Issues:3Issues:1

spriggan

Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.

Language:PythonLicense:GPL-3.0Stargazers:13Issues:3Issues:3

ar_report_generator

AR Report Generator is used to render a report from the output of pipelines that identify antibiotic resistance (AR) genes and/or examine prokaryote relatedness in outbreaks

Language:DockerfileLicense:GPL-3.0Stargazers:7Issues:2Issues:0

SPNtypeID

SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae.

Language:NextflowLicense:GPL-3.0Stargazers:2Issues:3Issues:8

augur-nf

Nextflow implementation of Nextstrain's Augur pipeline

Language:NextflowStargazers:1Issues:2Issues:1

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

Language:ShellLicense:MITStargazers:0Issues:0Issues:0

docker_builds

Language:DockerfileStargazers:0Issues:2Issues:0

miscellaneous_scripts

This repository contains miscellaneous scripts for processing or analyzing bioinformatics data

Language:PythonStargazers:0Issues:3Issues:0

tbQC

Language:GroovyLicense:GPL-3.0Stargazers:0Issues:2Issues:0

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Language:NextflowLicense:MITStargazers:0Issues:0Issues:0

mycosnp-nf

CDCgov/mycosnp-nf

License:Apache-2.0Stargazers:0Issues:0Issues:0

nf-core-awsomicstest

Language:NextflowLicense:MITStargazers:0Issues:3Issues:0