Doyle Q's repositories
bioinformatics
My study notes about bioinformatics
alphafold
Open source code for AlphaFold.
clash_for_windows_pkg
A Windows/macOS/Linux GUI based on Clash
dao_utilities
collection of in-house scripts
human_5utr_modeling
Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
ISCompare
ISCompare, an opensource program to identify Differentially Located Insertion Sequences
ISEScan
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
LinearDesign
The LinearDesign mRNA design software.
LinearFold
The new source code of the LinearFold, linear-time prediction for RNA secondary structures
LinearPartition
Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
popular-fonts
常用中文字体,可在Linux环境自用。
TnpB
Snakemake workflows for TAM depletion analysis and de novo IS605 annotation