world1tree / E2E-MSA

Cross attention based 2SA

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  1. Download Pfam-A.seed
  2. Prepare Data python3 prepare_data.py
  3. Train Model(gpu=xx) CUDA_VISIBLE_DEVICES=xx python3 train_msa.py
  4. Test Model(gpu=xx)
  • Get align.txt CUDA_VISIBLE_DEVICES=xx python3 test_msa.py
  • Compute Precision/Recall/F1 python3 compute_f1_score.py

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Cross attention based 2SA


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