Marnin Wolfe's repositories
genomicMateSelectR
Genomic Mate Selection
predCrossVar
Complete set of functions for the prediction of additive and dominance genetic variances and co-variances among full-siblings, based on parents.
PredictOutbredCrossVar
Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices
AlphaSimHlpR
Functions added to AlphaSimR to simplify simulating breeding schemes
alphaSimHlpR_denovo
Functions to facilitate simulation of a breeding program using AlphaSimR, inspired / based on AlfSimHlpR by Jean-luc Jannink and Moshood Bakare.
BreedingSchemeOpt
This workflowr project is for the NextGen Cassava Breeding Scheme Optimization.
EMBRAPA_2020GS
Conversion of DArTseqLD data and imputation of DArT report DCas20-5360 (EMBRAPA GS C2).
NaCRRI_2020GS
Conversion of DArTseqLD data and imputation of DArT report DCas20-5419 for NaCRRI. Additional genomic prediction and selection to follow.
NRCRI_2021GS
This project documents informatics and genomic prediction to support the National Root Crop Research Institute 2021 cassava genomic selection breeding program.
academic-starter-book
Project Docs / Knowledge Base / Personal Notebook template for Academic Website Builder
academic-www
📖 Documentation site for Academic Website Builder
CassavaGS_SOPs
The purpose of this document is as a manual, a teaching tool and a codebase to support genomic selection-related standard operating procedures (SOPs). This should serve to support the NextGen Cassava Breeding Project (http://www.nextgencassava.org) and its community of practice partnerships.
GSexample2022
GS Example Repository for 2022 workshop
hugo-academic
📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!
IITA_2019GS
Genomic selection of IITA GS C4, July 2019
IITA_2020GS
Refresh the IITA genomic predictions for all available germplasm with new field trial data.
IITA_EA_2020
Imputed and processed IITA-EA cassava DArTseqLD report "DCas20_5261".
NaCRRI_2019GS
Genomic selection of NaCRRI GS C2, September 2019
NGCtrialQualityMetrics
Analysis to compute quality metrics on NGC trials from DB for presentation and NGC 2020 project meeting.
NRCRI_2019GS
Genomic selection of NRCRI GS C2, July 2019
NRCRI_2020GS
April 2020: Re-prediction for genomic selection of NRCRI GS C2. Includes prediction of total genetic merit. Includes nearly package-able functions. October 2020: Imputation DCas20_5440 + DCas20_5510 plus fresh genomic prediction including GS C3a.
TARI_2020GS
TARI 2020 GS: (1) Conversion of DArTseqLD data and imputation of DArT report DCas20-5629 (with GS C1). (2) Cross-validation and genomic prediction
wolfe_website
Academic blog and website. Come to learn about me, stay for the quantitative genetics.