Will Macnair's repositories
psupertime
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
psupplementary
Supplementary data and analyses for the package psupertime
TreeTop
TreeTop is an algorithm for single-cell data analysis to identify and assess statistical significance of branch points in biological processes with possibly multi-level branching hierarchies. We demonstrate branch point identification for processes with varying topologies, including T cell maturation, B cell differentiation and hematopoiesis. Our analyses are consistent with recent experimental studies suggesting a shallow hierarchy of differentiation events in hematopoiesis, rather than the classical multi-level hierarchy.
TreeTop_data
Example data for package TreeTop
SampleQC_paper_analyses
workflowR website for SampleQC paper analyses