Luzheng's repositories
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
bbknn
Batch balanced KNN
CCST
Cell clustering for spatial transcriptomics data with graph neural network
CelliD
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
cytospace
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
DSTG
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
ggsci
🦄 Scientific journal and sci-fi themed color palettes for ggplot2
GraphSCC
single-cell RNA-seq clustering
GSEApy
Gene Set Enrichment Analysis in Python
omicverse
A python library for multi omics included bulk and single cell RNA-seq analysis.
rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
scanpy-tutorials
Scanpy Tutorials.
scDIOR
scDIOR: Single cell data IO softwaRe
sceasy
A package to help convert different single-cell data formats to each other
scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
scvi-tools
Deep probabilistic analysis of single-cell omics data
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Segment-Everything-Everywhere-All-At-Once
Official implementation of the paper "Segment Everything Everywhere All at Once"
SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
squidpy
Spatial Single Cell Analysis in Python
squidpy_notebooks
Tutorials for Squidpy
TensorExpand
集成包