Kokulapalan (Gokul) Wimalanathan's repositories
Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
jekyll-pubmed
A plugin to get the desired publication information from PubMed to include in jekyll site
icommands-cyverse
This is a singularity container for icommands compatible with CyVerse
feeling-responsive
»Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework. You can use it for your company site, as a portfolio or as a blog.
GO-MAP-doc
Latex documentation for GO-MAP pipeline to annotate GO terms to plants
gograph
Neo4j Gene Ontology Graph
graphviz-preview
GraphViz preview package for Atom text editor
interpro_rest
A rest api to get the description for the interpro scan signature accessions, some of which are not available from the results
pacbioapps
Singularity container for PacBio applications.
pitchfork
Prototyping pacbio build from github source
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Vennerable
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.
wkpalan-gh-jekyll
The jekyll source code that generates the static page
workspacer
a tiling window manager for Windows