Wisam Reid's repositories
aicsimageio-napari
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
bioformats2raw
Bio-Formats image file format to raw format converter
BrainVortexToolbox
Spiral Brain Dynamics
conformer-Keith-Downing
The models used in Keith Downing's ALife Journal paper (2023)
cookiecutter-napari-plugin
Cookiecutter for napari plugins
cred_assign_stimuli
Code for reproducing the stimuli for the Credit Assignment OpenScope project
imagej-mesh-3D-Visualization
Data structures and I/O for meshes
itkwidgets-image-data-visualization
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
kimimaro-Reconstruction-Skeletonize-Dense
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Mask3D-Semantic
Mask3D predicts accurate 3D semantic instances achieving state-of-the-art on ScanNet, ScanNet200, S3DIS and STPLS3D.
MemoryDependentComputation
Code for Limbacher, T., Özdenizci, O., & Legenstein, R. (2022). Memory-enriched computation and learning in spiking neural networks through Hebbian plasticity. arXiv preprint arXiv:2205.11276.
mij-ImageJ-Matlab
MIJ Matlab-ImageJ connector
napari-aicsimageio
Multiple file format reading directly into napari using pure Python
napari_lattice
Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
neuroaid_Neuroscience_And_AI_Reading_List
:zap: :books: Papers and other material for getting started with Neuro-AI! :brain: :boom:
nwb_hackathons
Repository for collecting materials from nwb hackathons
pybpod-api
pybpod-api
pybpod_Behavior_UI
Real-time behaviour measurement software
python-package-template
A template repo for Python packages
raw2ometiff
Raw format to OME-TIFF converter
Spillover
Glutamate spillover drives robust all-or-none dendritic plateau potentials—an in silico investigation using models of striatal projection neurons
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
thinking_fast_and_slow
Source code for <Thinking Fast and Slow - A novel multi-region computational-modelling framework for conceptual knowledge learning and consolidation> (WIP)
TMD-Topological-Analysis-Neurons
A python package for the topological analysis of neurons.