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wilsontom / r4ms-devel

Docker image for running R for Mass Spectrometry packages (devel) in RStudio

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R for Mass Spectrometry (devel)

Project Status: Active - The project has reached a stable, usable state and is being actively developed. Docker Image CI License

Docker image for running RStudio with the development version of R and Bioconductor

Specifications:

  • Rstudio
  • R-devel
  • MSnbase (bioc devel)
  • xcms (bioc devel)
  • MsFeatures (bioc devel)
  • SummarizedExperiment (bioc devel)

Usage

The container can be started by using docker run

docker run --name rstudio-devel --rm \
  -p 127.0.0.1:8787:8787 \
  -e DISABLE_AUTH=true \
  227ee30f3879

The container will then be accessible at localhost:8787

Or, you can clone the repository and use docker compose

git clone git@github.com:wilsontom/r4ms-devel.git

cd r4ms-devel/

docker-compose up -d

About

Docker image for running R for Mass Spectrometry packages (devel) in RStudio

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Language:Dockerfile 53.2%Language:R 46.8%