willros / virusclassification_nextflow

The nextflow workflow for the virus_classification application

virusclassification_nextflow

The nextflow workflow for the virus_classification application

Run the processes in micromamba-containers:
- https://github.com/mamba-org/micromamba-docker
bracken (bayesian estimation of abundance)
CAT/BAT
Simka
Run kraken/kaiju on the assembled MAGS/BINS/Contigs

The nextflow workflow for the virus_classification application

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