TIAM: the Tool for Integrative Analysis of Motility
This tool performs detection and tracking of cells from multi-channel time lapse microscopy video, extracts morphological and behavioral features, and analyzes extracted data.
A previous version of this tool went by the name "TC-MAT: the T Cell Motility Analysis Tool". Based on the general applicability of the tool and its success in detecting different types of cells, the name was changed to TIAM.
The code for TIAM is contained in src/.
The demo video and the user guide can be found in doc/.
The benchmark data can be obtained via the following link: http://j.mp/tiambenchmarkdatanew