williamgilpin

cfgen

Parse a text corpus and generate sentences in the same style using context-free grammar combined with a Markov chain.

hspmc

Monte Carlo simulation of hard sphere packing using MATLAB

rk4

Numerically solve the Henon-Heiles problem and generate Poincare sections using a simple implementation of RK4 integration

diccor

A set of MATLAB routines for generating displacement vector fields from black and white time series of images.

swimpy

Utilities for working with experimental fluid mechanics datasets

fracdiff

A set of tools for simulation of fractional Brownian motion

chaotic_ecosystem

Mathematica code for analysis of a chaotic ecosystem model

flowtrace_imagej

ImageJ / Fiji implementation of time-resolved flow tracing.

stdmap

Generation of phase space portraits illustrating the onset of chaos in the Chirikov standard map

flowtrace_matlab

MATLAB implementation of time-resolved flow tracing.

netsim

Tools for analyzing Markov models using statistical physics and graph theory

vergas

Simulation of a Lennard-Jones gas using Verlet integration. Calculation of autocorrelation and other descriptive statistics requiring dynamical information.

bioinformatics-algorithms

cellaut

Simple implementations of cellular automata for image processing and simulation

codebits

Small scripts and helper functions that help me get things done (various languages)

cs231n

My solutions to the assignments for Stanford's CS231n (Spring 2018)

flowtrace_docs

Documentation for flowtrace, simple visualization of biological fluid flows in MATLAB, Python, and ImageJ

gspie

A variable-timestep implementation of the Gillespie SSA for stochastic chemical reaction simulations.

identify-SNPS-in-Nanopore

latgas

A simulation of a lattice gas (with conserved particle counts) using the Metropolis algorithm

Metropolis

Metropolis Algorithm

travel

Some of my travel notes and records

wormseg

MATLAB scripts for segmenting and measuring microscope images of C. elegans.