Giters
williamgilpin
/
pypdb
A Python API for the RCSB Protein Data Bank (PDB)
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Stargazers:
303
Watchers:
21
Issues:
36
Forks:
77
williamgilpin/pypdb Issues
Access structure pH
Closed
5 months ago
Comments count
3
how to search PDBID via smiles of ligands
Updated
9 months ago
Searching field which returns a list of words
Closed
a year ago
Comments count
1
Searching via EC number
Updated
a year ago
Chemical description retrieval / new RCSB API
Closed
a year ago
Comments count
4
TypeError: 'NoneType' object is not subscriptable AND json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
Closed
2 years ago
Comments count
7
AttributeError: 'NoneType' object has no attribute 'status_code'
Closed
2 years ago
Comments count
3
get_ligands
Updated
2 years ago
Comments count
5
RCSB Search API V1 has been removed
Closed
2 years ago
Comments count
2
Negating Arbitrary Text Operators
Updated
2 years ago
Comments count
1
PyPDB for fetching .sdf (or .mol2) ligand coordinate
Updated
3 years ago
Comments count
2
Cannot perform the first query from the jupyter notebook
Closed
3 years ago
Comments count
3
Chain IDs
Updated
3 years ago
Comments count
1
How to get ligand SMILES from Protein?
Updated
3 years ago
Trouble with executing sample codes from section "New API for advanced search"
Closed
3 years ago
Comments count
2
Problem with the search() function trying to run the examples.
Closed
3 years ago
Installation problems
Closed
3 years ago
Comments count
3
RangeOperator dict needs updating
Closed
3 years ago
Comments count
2
Calling search on a Query that returns no results causes an AttributeError exception to be raised
Closed
4 years ago
Comments count
3
[Feature Request] Advanced search that pairs sequences with number of distinct entities
Closed
4 years ago
Comments count
4
Trouble with the function get_blast
Closed
4 years ago
Comments count
9
[API Refactor] - Would love to help
Closed
4 years ago
Comments count
4
Searching
Closed
4 years ago
Comments count
8
Can't Retrieve PDB Release Date
Closed
4 years ago
Comments count
3
get_all_info isn't working
Closed
4 years ago
Comments count
6
ETA on new release?
Closed
4 years ago
Comments count
7
Search by taxonomy
Closed
4 years ago
Comments count
8
get_all_info results in TypeError
Closed
4 years ago
Comments count
6
Getting BLAST scores from PyPDB
Closed
5 years ago
Comments count
2
do_search gives bad pdbid's when using MotifQuery search
Closed
5 years ago
Comments count
5
Adding PDB chain functionality: Chain Sequence, Chain Description, Chain Name, Taxonomy etc.
Closed
5 years ago
Comments count
1
get_pdb_file leads to broken link
Closed
5 years ago
Comments count
3
PDBs have 0 atoms
Closed
9 years ago
Comments count
2
KeyError when using list_types() and lists_taxa()
Closed
9 years ago
Comments count
1
find_authors() throws URLError: <urlopen error [Errno 60] Operation timed out>
Closed
9 years ago
Comments count
1