Kevin Stachelek's repositories
single-cell-tools
tools for pseudotime by cluster centroids and dimension reduciton
2024-08-02-CHLA
test training site
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chevreuldata
retinaCobrinik
CopyscAT
Inferring CNV data from single cell ATAC seq
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draft_issues
a place to collect draft issues
InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
megadepth
R interface to megadepth: BigWig and BAM related utilities
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numbat
Haplotype-aware CNV analysis from scRNA-Seq
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ocular_transcriptomes_pipeline
A Snakemake pipeline for constructing de novo*transcriptomes from the EiaD dataset
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scenic_src
a portable repo for running the scenic protocol
snakemake_template
A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.
MIT000
usespandas
An example R package, using Config/reticulate to ensure 'pandas' is installed on load.