wgsim's repositories
alphafold
Open source code for AlphaFold.
BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
CAISC
CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
GSEApy
Gene Set Enrichment Analysis in Python
mousipy
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
scikit-posthocs
Multiple Pairwise Comparisons (Post Hoc) Tests in Python
scsnv
scSNV Mapping tool for 10X Single Cell Data
scvelo
RNA Velocity generalized through dynamical modeling
scvi-tools
Deep probabilistic analysis of single-cell omics data
strelka
Strelka2 germline and somatic small variant caller
Warp
Warp is a blazingly-fast modern Rust based GPU-accelerated terminal built to make you and your team more productive.