wgmao

PLIER

Pathway-Level Information Extractor (PLIER): a generative model for gene expression data

NIFA

Non-negative Independent Factor Analysis for single cell RNA-seq

DataRemix

A universal data transformation for optimal inference from gene expression datasets

EPIANN

Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks

DelayedPLIER

3D-printed-mirror-array

3D-printable hexagonal mirror array capable of reflecting sunlight into arbitrary patterns

ALLCools

Tool kit for ALLC format and methylation analysis

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

circlize

Circular visualization in R

ComplexHeatmap

Make Complex Heatmaps

biolearn

Machine learning tools for biomarker analysis

Deep-COOC

Deep Co-occurrence Feature Learning for Visual Object Recognition (CVPR 2017)

GWAS-pipeline

This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.

marge

API for HOMER in R for Genomic Analysis using Tidy Conventions

MethReg

An R package to assess the regulatory potential of DNA methylation regions or sites on gene transcription

openbilibili

PyPLIER

RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

RERconverge

Analysis of convergence between organismal traits and DNA/protein sequences

Rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

sceasy

A package to help convert different single-cell data formats to each other

SingleCellSignalR

R package for Bioconductor submission

wgmao.github.io

Personal website