wesley-wt

deep_learning_in_proteomics

A list of tools on proteomics using deep learning

MSencoding

CNN-GNN encoder for tandem MS spectra

Awesome-Diffusion-Models

A collection of resources and papers on Diffusion Models

SMSNet

denovopipeline

Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

DeepNovoV2

Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.

template

This is the repository for the distill web framework

Graph2Seq

Graph2Seq is a simple code for building a graph-encoder and sequence-decoder for NLP and other AI/ML/DL tasks.

pepnet

Neural networks for amino acid sequences