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csg-snakemake

Tech Talk for Snakemake

snipper

A program for quickly researching genes and other genomic features near disease-associated regions of the genome (from GWAS or sequencing studies.)

csg-jupyter-tutorial

A quick tutorial on using the jupyter notebook for CSG users.

apex

Toolkit for QTL mapping and meta-analysis.

as241

cget

C++ package retrieval

csg-learning

Learning materials for CSG

example

example

fusion_github_test

gwas-credible-sets

Credible set determination in GWAS results

htslib

C library for high-throughput sequencing data formats

iterate_bgen

Example of iterating over bgen file

libRmath.js

Javascript Pure Implementation of Statistical R "core" numerical libRmath.so

locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

METAL

Meta-analysis of genomewide association scans

mvtnorm.js

Multivariate normal cumulative distribution function compiled to JS/WASM

nullmetal

SLURM-examples

tabixpp

C++ wrapper to tabix indexer

tensorqtl

Ultrafast GPU-enabled QTL mapper

test-travis

VARV

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