welch16

gwas_vitamind_african_ancestry

Code for the "Genome-wide association study (GWAS) and functional analysis of genetic variants associated with circulating vitamin D binding protein in African Americans

ChIPexoQual

A quality control pipeline for ChIP-exo/nexus samples.

ChIPUtils

A package with basic utilities for ChIP analysis (both ChIP-seq and ChIP-exo)

cisr2021singlecellRNA

UWCCC 2021 single cell RNA-seq tutorial

rwlib

Functions that I use often

Segvis

Package to visualize next generation sequencing data along genomic regions

microbiome.onglab

A wrapper for dada2

BISCUIT_SingleCell_IMM_ICML_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

ChIPexo

ChIP-Exo is a new techonology for sequencing which obtains a higher accuracy to predict TFBS

ChIPexoQualExample

Example data for the ChIPexoQual pacakge

complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

create_bioc_package

Slides about my experience creating a bioconductor package

drake_slides

slides for group meeting about using drake

EBV_NOK

Repository for a study of the biological effects of EBV in epithelial cells

fastqcr

fastqcr: Quality Control of Sequencing Data

FMHighLD

ggtech

ggplot2 tech themes, scales, and geoms

ihw_slides

Group meeting presentation about IHW

intro_to_llm

microbiome-pipeline

A pipeline for processing 16S / ITS data

ML-X-Nexus

mmmisc

My Library of R Helpers

recursive_elimination_by_sensitivity_testing

This repo provides a novel feature selection algorithm called Recursive Feature Elimination by Sensitivity Testing.

renewelch.me

snakemake-demos

Example Snakefiles for various use cases

tcr

tcR: an R package for immune receptor repertoire advanced data analysis.

UWCCC.GWAS

welch16.rbind.io

xaringan

Presentation Ninja 幻灯忍者 · 写轮眼

YY1_chipseq_tracks