Beast code in Giters

welch-lab's repositories

liger

R package for integrating and analyzing multiple single-cell datasets

Language:RGPL-3.0379 22 188

MultiVelo

Multi-omic velocity inference

Language:PythonBSD-3-Clause106 7 34

VeloVAE

Deep Generative Modeling of RNA Velocity

Language:Jupyter NotebookBSD-3-Clause34 5 6

pyliger

Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

Language:Jupyter NotebookGPL-3.027 3 17

PerturbNet

PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

Language:PythonGPL-3.026 2 4

SquiggleNet

Language:PythonMIT20 6 5

MichiGAN

Learning disentangled representations of single-cell data for high-quality generation

Language:PythonGPL-3.015 3 2

cytosignal

Language:R12 3 10

AF2_scRNA

Language:Jupyter Notebook3 30

pyCytoSimplex

Create simplex plot showing similarity between single-cells and terminal clusters

Language:PythonGPL-3.03 10

RcppPlanc

Language:C++GPL-2.03 2 7

topologizer

Topologizer

Language:PythonGPL-3.02 20

welch-lab.github.io.old

Language:HTML2 10

BICCN

Language:R1 2 13

CytoSimplex

Simplex plot showing similarity between single-cells and clusters

Language:R1 20

kepler-mapper

KeplerMapper is a Python class for visualization of high-dimensional data and 3-D point cloud data.

Language:PythonMIT1 10

SnapATAC

Single Nucleus Analysis Pipeline for ATAC-seq

Language:RGPL-3.01 20

actions-eleventy

GitHub Action for generating a static website with Eleventy

Language:Shell000

ConvNetVAE

Language:Jupyter NotebookBSD-3-Clause03 1

cppliger

Language:CMakeUnlicense030

illustrator_tutorial

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SiNMFiD

Language:HTMLNOASSERTION020

steamer

Language:Python010

TopoVelo

Language:Jupyter NotebookGPL-3.0000

welch-lab.github.io

Welch Lab

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welch-lab.r-universe.dev

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