W. Evan Johnson Lab

animalcules

R shiny app for interactive microbiome analysis

MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

TBSignatureProfiler

Profile RNA-seq data using published TB gene signatures

BatchQC

Batch Effects Quality Control Software

ASSIGN

Adaptive Signature Selection and InteGratioN

PathoStat

The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.

curatedTBData

Curation of existing TB gene expression datasets

curatedTBExplorer

This is the repository for the curatedTBExplorer shiny interface to view and analyze the curatedTBData

LegATo

An R-based Longitudinal mEtaGenomic Analysis Toolkit for microbiome data

materials

TBSignatureProfiler-docs

A repository to host the files for the TBSignatureProfiler website.

wejlab.github.io

Repository for wejlab.github.io

animalcules-docs

LegATo-docs

Docs for the LegATo website

metascope-docs

Repository holding documents for the MetaScope website

sctk_docs

Documentation Source for singleCellTK

singleCellTK

Interactively Analyze scRNA-Seq Data