weixuanfu

tpot

A Python tool that automatically creates and optimizes machine learning pipelines using genetic programming.

tiny_gp

Tiny Genetic Programming in Python

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bfx-tools-wdl

WDL tasks for commonly used BFX tools

CytoMethIC

cyvcf2

cython + htslib == fast VCF and BCF processing

deap

Distributed Evolutionary Algorithms in Python

feat

A feature engineering automation tool for learning data representations

HIBACHI_ML

LPC

Documentation and informational resources for LPC use

mnp_training

DNA methylation-based classification of central nervous system tumours

MuPeXI

MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.

penn-ml-benchmarks

A large, curated repository of benchmarks for evaluating supervised machine learning algorithms.

pennai

the Penn AI engine.

plasmodium-falciparum

Malaria DREAM sub-challenge 2 write-up

psb-manuscript

Manuscript source for the People of the Pacific Symposium on Biocomputing

pVAC-Seq

This tools has been superseded by https://github.com/griffithlab/pVACtools

ReBATE

Relief Based Algorithms of ReBATE implemented in Python with Cython optimization.

scikit-learn

scikit-learn: machine learning in Python

scikit-mdr

A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

scikit-rebate

A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

spark-sklearn

Scikit-learn integration package for Spark

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

tensorflow

Computation using data flow graphs for scalable machine learning

tpot-ds-ms

Manuscript for tpot-ds

vimrc

The ultimate Vim configuration: vimrc