David Weisz's repositories
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
BioContainers
Bioinformatics containers
fastz-release
proof of concept integration of FastZ with LASTZ
hic-pipeline
HiC uniform processing pipeline
Juicebox
Visualization and analysis software for Hi-C data -
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
pawsey-containers
A collection of Dockerfiles and Singularity deffiles for Pawsey-supported images
SegAlign
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
slurm-docker-cluster
A Slurm cluster using docker-compose
straw
Extract data quickly from Juicebox via straw
terminator
multiple GNOME terminals in one window
TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
tunnel-guacamole
[Mirror] Cloudflare Argo Tunnel with Apache Guacamole
w2rap-contigger
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
winutil
Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates