Dr. Daniel Weilandt's repositories
tca_fluxes
TCA Flux calculations for Bartman et al. Nature (2023)
cobrapy
COBRApy is a package for constraint-based modeling of biological networks
competitive_catabolism
Models and analysis for the paper on competitive catabolism
DiffEqBiological.jl
DiffEq related functionality for defining biological models
EB_Kinetics2
This repository contains all code used in the following paper to describe reversible electron bifurcation with refilling. https://doi.org/10.1016/j.chempr.2021.03.016
ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
lactate_homeostasis
A reductionist whole-body model for lactate homeostasis
openfpm_pdata
Distributed data structure
pysb
Python framework for Systems Biology modeling
rab_jp
Code for junior paper under supervision of Joshua Rabinowitz
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae