Parry's repositories
vtk-examples
This is the VTK Examples Web Site. This is a mirror of the https://gitlab.kitware.com/vtk/vtk-examples repository in order to host web pages. DO NOT SUBMIT MERGE REQUESTS HERE.
CellProfiler
An open-source application for biological image analysis
AutomaticWeightedLoss
Multi-task learning using uncertainty to weigh losses for scene geometry and semantics, Auxiliary Tasks in Multi-task Learning
py-wsi
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
MoNuSAC
This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their models at ISBI 2020.
MoNuSeg
This repository contains my implementations of the algorithms which we used for evaluation of the MoNuSeg challenge at MICCAI 2018.