Thomas Weber's repositories
ashleys_qc_dash
Dash web server to monitor ashleys-qc runs output
bioconda-recipes
Conda recipes for the bioconda channel.
chat-gpt-starter
This is a Python Flask starter pack for a ChatGPT project that uses OpenAI API to create a ChatGPT chatbox.
mosaicatcher
Processing of raw Strand-seq data as part of the SV calling pipeline
mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
NAHRwhals
R package and wrapper functions for identifying serial structural variations from genome assemblies
pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
sapporo-service
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.
sapporo-web
A web application for managing and executing WES services.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake_profiles
Snakemake profiles
StrandPhaseR
R Package for phasing of single cell Strand-seq data
strandseq-pooling-sample-id
Identification of Strand-Seq pooled libraries based on 1000G SNP genotyping