wbeardall's repositories
buildkit
concurrent, cache-efficient, and Dockerfile-agnostic builder toolkit
combinatorial-experiment
Lightweight hyperparameter experimentation framework for small ML jobs.
docker.github.io
Source repo for Docker's Documentation
Gillespie_M3
Python3 repository for the MRes in Systems and Synthetic Biology Coursework 3 (Theoretical Systems Biology) at Imperial College London.
gnn-lspe
Fork of Official Implementation of Graph Neural Networks with Learnable Structural and Positional Representations (http://arxiv.org/abs/2110.07875)
ic-bioeng-mib
Python implementation of the Modelling in Biology Part 1 problem sheet set.
linear_operator
A LinearOperator implementation to wrap the numerical nuts and bolts of GPyTorch
petastorm
Petastorm library enables single machine or distributed training and evaluation of deep learning models from datasets in Apache Parquet format. It supports ML frameworks such as Tensorflow, Pytorch, and PySpark and can be used from pure Python code.
probability
Probabilistic reasoning and statistical analysis in TensorFlow
polars-xdt
Polars plugin offering eXtra stuff for DateTimes
pytorch_geometric
Graph Neural Network Library for PyTorch
scheduler-tools
Tools for making PBS less painful.
smart_open
Utils for streaming large files (S3, HDFS, gzip, bz2...)
torchmetrics
Torchmetrics - Machine learning metrics for distributed, scalable PyTorch applications.