Wen Qin's repositories
ANTs
Advanced Normalization Tools (ANTs)
BackgroundMattingV2
Real-Time High-Resolution Background Matting
ComBatHarmonization
Harmonization of multi-site imaging data with ComBat
dmipy
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
eRDS6
Stereoacuity test
ExploreASL
ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.mutsaerts@amsterdamumc.nl. Development details can be found under the wiki tab. Code documentation can be found on the documentation website https://exploreasl.github.io/Documentation
FamilyPermutationABCD
Multi-level block permutation accounting for family relatedness in the ABCD cohort and whole brain mediation analysis and gene enrichment analysis using Allen Brain
glimix-core
Fast inference for Generalised Linear Mixed Models.
jsonlab
JSONLab: a native JSON/UBJSON/MassagePack encoder/decoder for MATLAB/Octave
languagetool
Style and Grammar Checker for 25+ Languages
MDT
Microstructure Diffusion Toolbox
MediationToolbox
Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
MVPANI
teee
NBS_benchmarking
Expanded NBS tools for new statistics and benchmarking
neuroHarmonize
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI, NIFTI images supported.
nii_preprocess
nii_preprocess adapted for LARC and ABC studies at UofSC
OCT-Converter
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
qspace
q-space: multishell sampling and continuous reconstruction of diffusion signal
TFCE_mediation
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE