Wen Qin's repositories
BackgroundMattingV2
Real-Time High-Resolution Background Matting
eRDS6
Stereoacuity test
ExploreASL
ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.mutsaerts@amsterdamumc.nl. Development details can be found under the wiki tab. Code documentation can be found on the documentation website https://exploreasl.github.io/Documentation
FamilyPermutationABCD
Multi-level block permutation accounting for family relatedness in the ABCD cohort and whole brain mediation analysis and gene enrichment analysis using Allen Brain
ggslicer
Prepare and visualize volumetric imaging data using ggplot
glimix-core
Fast inference for Generalised Linear Mixed Models.
languagetool
Style and Grammar Checker for 25+ Languages
MDT
Microstructure Diffusion Toolbox
MediationToolbox
Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
NBS_benchmarking
Expanded NBS tools for new statistics and benchmarking
neuroHarmonize
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI, NIFTI images supported.
nii_preprocess
nii_preprocess adapted for LARC and ABC studies at UofSC
OCT-Converter
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
osl-dynamics
Methods for studying dynamic functional brain activity in neuroimaging data.