Wasserman Lab

ExplaiNN

ExplaiNN: interpretable and transparent neural networks for genomics

Variant_catalogue_pipeline

Variant catalogue pipeline

JASPAR-UCSC-tracks

Code and data used to create the JASPAR UCSC Genome Browser tracks data hub

TFFM

TFFM framework

BiasAway

TF-Binding-Transfer-Learning

IPython notebooks and scripts for performing the different transfer learning experiments

JASPAR-inference-tool

Code and data used by the JASPAR profile inference tool

OpenFlexTyper

An FM-index based tool for the rapid search of variants/sequences within unmapped read sets.

gene2wordclouds

GeneBreaker

GeneBreaker - Enabling the creation of synthetic rare disease scenarios

TF-Binding-Matrix

A sparse 3D matrix of 2,503,732 bound and open regions across 175 transcription factors and 70 cells/tissues

variome

ADS

Allele Dispersion Score : Quantifying the range of allele frequencies across populations, based on UMAP

OnTarget

revup

OpenFlexTyper_restore

OpenFlexTyper

pubmed_db

PubmedDB

DemoProject_InternalContrib

Demo project for the Wasserman lab organization

GUD

Genomic Unification Database

wassermanlab.github.io

XEnrich

CTCF

Doxygen_Example

An example set up for Doxygen to auto generate Github Pages

IBVL

JASPAR-versions

Scripts to create the JASPAR profile versions table in HTML format

knits

plp

PWM-to-filter-weights

scheduler

transformers