Tom Warner's repositories
analysis-tools
Code for analyzing data saved by the Open Ephys GUI
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
chimpy
CHIME recording analysis tools
diffractsim
✨ A diffraction simulator for exploring and visualizing physical optics.
neurolytics
Structures to hold and analyse electrophysiological data - work in progress
openai_tools
Just a drop of script to use ChatGPT API
phd-thesis-template
A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
phy
Modules for manual spike sorting GUIs, ephys data analysis, visualization
schedule-generator
A GUI tool for generating schedules - sequences of trials that run in AutonoMouse
spikeextractors
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
SUPPORT
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
tensortools
Fitting and visualizing tensor decompositions in Python
wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering