Wanjin Hu（胡万金）'s repositories
Metagenomic-Analysis-Pipeline
Metagenomic sequence data analysis pipeline
Microbial-genome
all about microbial genome
Bioinformatics-Training
Bioinformatics training resources
reference_genome_download
参考基因组自动化下载方法
alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
APERO
small RNA detection from paired-end RNA-seq data
awesome-nextflow
A curated list of nextflow based pipelines
CAFE5
Version 5 of the CAFE phylogenetics software
GitHub-Chinese-Top-Charts
:cn: GitHub中文排行榜，各语言分设「软件 | 资料」榜单，精准定位中文好项目。各取所需，高效学习。
scikit-learn
study process of scikit-learn
lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
microeco
An R package for data analysis in microbial community ecology
NCBI_genome_download
Python script for downloading bacterial genomes from NCBI ftp
pb-metagenomics-tools
pb-metagenomics-tools
pgap
NCBI Prokaryotic Genome Annotation Pipeline
PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
pydata-notebook
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
Python-Programs
My collection of Python Programs
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
SqueezeMeta
A complete pipeline for metagenomic analysis
Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes