wangzlab's repositories
COPD_multiomics
This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.
population_airway_microbiome
This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interaction between environmental exposure and respiratory health'.
COPD_metaanalysis
This depository contains key scripts used to analyze the data in the manuscript "Multi-omic meta-analysis identifies functional signatures of airway microbiome in COPD" by Wang et al.
Strain_ID_FL16S
An automated pipeline for strain identification using Pacbio full-length 16S data
AERIS_MAP_BEAT_analysis
This repository contains perl and R scripts used to analyze the airway microbiome data for AERIS, COPDMAP and BEAT-COPD cohorts.
COPD_Resistome
This repository contains pipeline for the resistome analysis on sputum metagenomic data for COPD patients, as well as related R scripts for data visualization.
Microbiome_Lung_Function
This repository contains custom computer codes for main analyses in manuscript 'Airway Dysbiosis Accelerates Lung Function Decline in Chronic Obstructive Pulmonary Disease'.
The_Interactome
This repository is a part of a publication that has been recently accepted for publication at Nature Medicine.