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wangyibin / TDGP

my 3D genome pipeline and scripts repository

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TDGP

Three Dimensional Genome Pipeline

my 3D genome pipeline and scripts

Install

export PATH=/path/to/TDGP/bin:/path/to/TDGP/utils:$PATH
export PYTHONPATH=/path/to/TDGP:$PYTHONPATH

Dependencies

requirement

  • pysam
  • cooler
  • joblib
  • numpy = 1.16.1
  • matplotlib
  • pandas
  • pyranges
  • seaborn >= 0.9.0
  • snakemake
  • xlwt

optional

  • pyGenomeTracks
  • deeptools
  • tadlib

About

my 3D genome pipeline and scripts repository

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