INSTALL
sudo apt-get install libncurses5-dev
cd samtools-0.1.19
make
cd ..
make
USAGE
name: snpview 0.2
func: a text based multiple BAM alignment viewer
author: Yi Wang @ Fudan University
usage: snpview [options] <chr pos> [bam1 bam2...]
-l <bams> add BAMs listed in a file
-r <ref.fa> load reference
-w <width> half window size
-R <val> set max base quality in red (3)
-Y <val> set max base quality in yellow (6)
-G <val> set max base quality in green (18)
-c use vt100 color
-C collapse insertions
-v show variant reads only
-n don't reset the console
-m filter read by mask