Panqiao Wang's repositories
lncRNA_Pipeline
Identification of lncRNA by R, perl and shell scripts
AiQiangGUO
Ai强国 基于Autojs实现的模拟点击学习强国辅助工具 适配安卓
assignPOP
Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
binmapr
R package for binmap
brassica-snps
Scripts for bulk segregant analysis and genotyping of Brassica (T1000 & Jersey Kale)
BSA-seqDesignTool
BSA-seq Design Tool
Cavefish_Paper
Scripts for analysis and figure preparation for Shafer et. al. Gene family evolution underlies cell type diversification in the hypothalamus of teleosts
cervus_parse
A script for parsing zipped vcf files (from an Ion Torrent run) to a genotype format for Cervus
Chrom_Functional_Clusters
Find enriched functional clusters (pfam/ipr/gene family etc) on chromosomes.
Eagle
Haplotype phasing software
flo
Same species annotation lift over pipeline.
GBS-SNP-CROP
GBS SNP Calling Reference Optional Pipeline
in_silico_pcr
Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
learning-power
学习强国 自动化 百分百正确、瞬间答题，分值45分
onestep_RNAseq
RNAseq pipeline with shell scripts
Pcap-QTL-Mapping
Relevant scripts for manuscript "A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash."
phylogenomics_pipeline
After gene family clusing using Orthofinder, single copy nuclear genes and low copies nuclear genes were used to infer the phlogenies between related taxon, three types of data or algorithms were implemented to achive this goal. the perl script phylogenomics_4dtv.pl inferred the phylogeny using four-fold degenerated sites (4DTvs) of combined single copy nuclear genes;
protParamWrap
wrapper to submit multiple sequences to analyze with protParam tool
PySNPIndex
BSA-Seq data analysis - Python implementation of the SNP index method
qtl2
QTL analysis software for high-dimensional data and complex cross designs
tessdata
Trained models with support for legacy and LSTM OCR engine
tween.js
JavaScript animation engine