Alan93's repositories
apomixis_parallel_evolution
A groups of data and scripts in the analysis
Sniffles_vcf_2_vg_vcf
output from Sniffles and filter with read by vg input
AG_crossover
AG_crossover
Language:PythonGPL-3.0000
angsd-wrapper
A project for extending ANGSD
Language:C++MIT000
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
CC-BY-SA-4.0000
EIG
Eigen tools by Nick Patterson and Alkes Price lab
Language:CNOASSERTION000
Haplotype-diversity
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Language:Python000
ngsF
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Language:CNOASSERTION000
GPL-3.0000
vcfToHaploytypeTrees
Starting with a phased (e.g. with beagle) VCF, parse into independent loci, build alignment files with reference, pull in ax/tig data, build trees, and visualize
Language:PerlMIT000