Lei Wang's repositories
label-smoothing-pytorch
label smoothing PyTorch implementation
DSSPparser
DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom between the PDB id and dssp format, hssp format and sequence.
deeplearning-protein
A paper list of deep learning implementations in protein field
alphafold4slurm
Open source code for AlphaFold.
BMList
A List of Big Models
gae-dgl
Reimplementation of Graph Autoencoder by Kipf & Welling with DGL.
CLEAN
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
infinibatch_pytorch
Efficient, check-pointed data loading for deep learning with massive data sets.
ngl
WebGL protein viewer
OmegaFold
OmegaFold Release Code
openbabel
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
paper-reading
深度学习经典、新论文逐段精读
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
python-libraptorq
Python CFFI bindings for libRaptorQ (RaptorQ RFC6330 FEC implementation)
releasing-research-code
Tips for releasing research code in Machine Learning (with official NeurIPS 2020 recommendations)
tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
TMalign
This repo is outdated. Please use https://github.com/pylelab/USalign instead
wangleiofficial.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics