wangbao0716

awesome-AI4MolConformation-MD

List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning

autocoalhmm

Automated pipeline for running CoalHMM

Lecture-Notes-in-Population-Genetics

LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut

F4

Assessing confidence in introgression among four populations

MetBrewer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

GenoDup-Pipeline

This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.

algorithm-base

一位酷爱做饭的程序员，立志用动画将算法说的通俗易懂。我的面试网站 www.chengxuchu.com

pml-book

"Probabilistic Machine Learning" - a book series by Kevin Murphy

tutorials

Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

cactus

Official home of genome aligner based upon notion of Cactus graphs

pyprobml

Python code for "Probabilistic Machine learning" book by Kevin Murphy

TeachingMaterial

RNA-seq data analysis practical

catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

bpp

Bayesian analysis of genomic sequence data under the multispecies coalescent model

Leetcode

🎓Leetcode solutions in Python 📚

tutorials

Tutorials on phylogenetic and phylogenomic inference

ronco_et_al

Repository for scripts used in Ronco et al. (resubmitted).

Popgen_teaching_code

SVFX

Machine learning framework to quantify pathogenicity of structural variants

Beautiful-Visualization-with-R

《R语言数据可视化之美》配套代码

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

learning-bioinformatics-at-home

resources for learning bioinformatics

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Easy_HMM

A easy HMM program written with Python, including the full codes of training, prediction and decoding.

ka_ks_pipe

admixture-wrapper

A tool to automate analyses in admixture, a program used for detecting population structure with SNP data.

Statistical_Rethinking_with_brms_ggplot2_and_the_tidyverse_2_ed

The bookdown version lives here:

f5c

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)