phy_clo_dy
Phylogenetic inference from whole genome sequencing data and modeling of clonal dynamics.
The R-script Phylogenetic_inference.R contains functions to infer genetic subclones and their phylogenetic relationships from whole genome sequencing data. Please refer to the Readme_for_phylogenetic_inference.txt file for description.
The R-script Clonal_dynamics.R contains functions to infer tumor growth dynamics from mutation counts.