waldronlab / HGNChelper

Identify and correct invalid gene symbols

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checkGeneSymbols not finding approved gene symbols for mitochondrial genes

kaizen89 opened this issue · comments

HGNChelper::checkGeneSymbols("mt-Nd2", species="mouse")
Maps last updated on: Mon Apr  4 17:31:23 2022
       x Approved Suggested.Symbol
1 mt-Nd2    FALSE         AU018611
Warning message:
In HGNChelper::checkGeneSymbols("mt-Nd2", species = "mouse") :
  x contains non-approved gene symbols

Am I missing something?

Hi @kaizen89,
Sorry for the very delayed response.
It's probably due to the outdated map.
With the newer version, there seems to be no issue.

> HGNChelper::checkGeneSymbols("mt-Nd2", species="mouse")
Maps last updated on: Fri May 17 15:09:37 2024
       x Approved Suggested.Symbol
1 mt-Nd2     TRUE           mt-Nd2