Benjamin David Walcott's repositories
PicToCross
A web app to generate a puzzle from an image and to play such puzzles
dessertIsland
An iOS app for viewing dessert recipes
Seamly2D
Open source patternmaking software to democratize fashion.
maptool
Virtual Tabletop for playing roleplaying games with remote players or face to face.
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
thesis-1
RPI PhD thesis
HW2_alignment
HW 2 for Bioinformatics I, performs an alignment of two sequences given a scoring matrix
patternFind
These programs are intended to search a FASTA sequence of a protein or dna for a specific pattern specified in either prosite or IUPAC format respectively. They take in a few command
superP
A short Python script that generates a csv of superposition matrices and vectors of all phosphates in a DNA molecule
seamTest
Code and database for testing new seam implementation in GeoFold
PX
Code written for the PX project
datasharing
The Leek group guide to data sharing
LoopHash
Builds and hashes a database of protein loops. Includes lookup functionality.
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
testExtension
My first Chrome extension. Made by following the tutorial here: https://developer.chrome.com/extensions/getstarted. Allows the user to change the background color of a webpage.
r_hw4
Homework 4 for R Programming course on Coursera
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
getDist
Simple Python script using BioPython to extract the distances between scissile phosphates in PX DNA and in a Holliday junction from PDB 2PFJ
job_distributor
A generic job distributor class for farming out and managing MPI jobs using mpi4py, scipy, and numpy
DNAWorks
Automatic oligonucleotide design for PCR-based gene synthesis